{
"_id": "6a32800e3efcd9bda438ad8d",
"Package": "rfacts",
"Title": "R Interface to 'FACTS' on Unix-Like Systems",
"Description": "The 'rfacts' package is an R interface to the Fixed and\nAdaptive Clinical Trial Simulator ('FACTS') on Unix-like\nsystems. It programmatically invokes 'FACTS' to run clinical\ntrial simulations, and it aggregates simulation output data\ninto tidy data frames. These capabilities provide end-to-end\nautomation for large-scale simulation pipelines, and they\nenhance computational reproducibility. For more information on\n'FACTS' itself, please visit\n.",
"Version": "0.2.1.9000",
"License": "MIT + file LICENSE",
"URL": "https://elilillyco.github.io/rfacts/,\nhttps://github.com/EliLillyCo/rfacts",
"BugReports": "https://github.com/EliLillyCo/rfacts/issues",
"Authors@R": "c(\nperson(\nfamily = \"Landau\",\ngiven = c(\"William\", \"Michael\"),\nemail = \"will.landau@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1878-3253\")\n),\nperson(\nfamily = \"Eli Lilly and Company\",\nrole = \"cph\"\n))",
"SystemRequirements": "FACTS Linux engines (>= 6.2.4), FLFLL (>= 6.2.4),\nMono (>= 5.20.1.19)",
"VignetteBuilder": "knitr",
"Config/testthat/edition": "3",
"Language": "en-US",
"Encoding": "UTF-8",
"Roxygen": "list(markdown = TRUE)",
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"Config/pak/sysreqs": "cmake make libuv1-dev libxml2-dev",
"Repository": "https://elilillyco.r-universe.dev",
"Date/Publication": "2022-08-19 12:56:17 UTC",
"RemoteUrl": "https://github.com/elilillyco/rfacts",
"RemoteRef": "HEAD",
"RemoteSha": "6b7c160a418234def7bc095b65d84ba34f91a9a1",
"NeedsCompilation": "no",
"Packaged": {
"Date": "2026-06-17 11:03:44 UTC",
"User": "root"
},
"Author": "William Michael Landau [aut, cre] (ORCID:\n),\nEli Lilly and Company [cph]",
"Maintainer": "William Michael Landau ",
"MD5sum": "521d607988692bdf02e299349aba0c53",
"_user": "elilillyco",
"_type": "src",
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"message": "Dev version\n",
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"email": "will.landau@gmail.com",
"login": "wlandau",
"orcid": "0000-0003-1878-3253",
"twitter": "@wmlandau",
"description": "Statistician and developer",
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"_owner": "elilillyco",
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"_usedby": 0,
"_updates": [],
"_tags": [],
"_topics": [
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"facts",
"simulation"
],
"_stars": 8,
"_contributors": [
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"count": 52,
"uuid": 22958003
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"type": "organization",
"name": "Eli Lilly & Company",
"followers": 2772,
"description": "Eli Lilly & Company GitHub Organization"
},
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"source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rfacts"
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"_rbuild": "4.6.0",
"_assets": [
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"extra/citation.json",
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"extra/NEWS.txt",
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],
"_homeurl": "https://github.com/elilillyco/rfacts",
"_realowner": "elilillyco",
"_cranurl": true,
"_releases": [
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"date": "2020-10-14"
},
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"date": "2021-01-04"
},
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},
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"version": "0.2.0",
"date": "2022-01-04"
},
{
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}
],
"_exports": [
"get_csv_files",
"get_facts_engine",
"get_facts_file_example",
"get_facts_scenarios",
"get_facts_version",
"get_facts_versions",
"get_param_dirs",
"get_param_files",
"overwrite_csv_files",
"prep_param_files",
"read_cohorts",
"read_csv_special",
"read_facts",
"read_master_mcmc",
"read_master_patients",
"read_master_weeks",
"read_mcmc",
"read_patients",
"read_s1_mcmc",
"read_s1_patients",
"read_s1_weeks",
"read_s2_mcmc",
"read_s2_patients",
"read_s2_weeks",
"read_simulations",
"read_weeks",
"reset_rfacts_paths",
"rfacts_paths",
"rfacts_sitrep",
"run_engine",
"run_engine_aipf_contin",
"run_engine_aipf_dichot",
"run_engine_aipf_tte",
"run_engine_contin",
"run_engine_crm",
"run_engine_dichot",
"run_engine_multep",
"run_engine_tte",
"run_facts",
"run_flfll",
"write_facts"
],
"_help": [
{
"page": "rfacts-package",
"title": "rfacts: interface to FACTS on Unix-like systems",
"topics": [
"rfacts-package",
"rfacts"
]
},
{
"page": "facts_engines",
"title": "Engine-specific trial simulation functions",
"topics": [
"facts_engines",
"run_engine_aipf_contin",
"run_engine_aipf_dichot",
"run_engine_aipf_tte",
"run_engine_contin",
"run_engine_crm",
"run_engine_dichot",
"run_engine_multep",
"run_engine_tte"
]
},
{
"page": "facts_results",
"title": "Read trial simulation results",
"topics": [
"facts_results",
"read_cohorts",
"read_csv_special",
"read_master_mcmc",
"read_master_patients",
"read_master_weeks",
"read_mcmc",
"read_patients",
"read_s1_mcmc",
"read_s1_patients",
"read_s1_weeks",
"read_s2_mcmc",
"read_s2_patients",
"read_s2_weeks",
"read_simulations",
"read_weeks"
]
},
{
"page": "get_csv_files",
"title": "List FACTS-generated CSV files",
"topics": [
"get_csv_files"
]
},
{
"page": "get_facts_engine",
"title": "Get the FACTS engine function matching your FACTS file",
"topics": [
"get_facts_engine"
]
},
{
"page": "get_facts_file_example",
"title": "Locate an example FACTS file",
"topics": [
"get_facts_file_example"
]
},
{
"page": "get_facts_scenarios",
"title": "List the names of simulation scenarios",
"topics": [
"get_facts_scenarios"
]
},
{
"page": "get_facts_version",
"title": "Get FACTS version matching your FACTS file",
"topics": [
"get_facts_version"
]
},
{
"page": "get_facts_versions",
"title": "List supported FACTS versions",
"topics": [
"get_facts_versions"
]
},
{
"page": "get_param_dirs",
"title": "List the directories containing param files",
"topics": [
"get_param_dirs"
]
},
{
"page": "get_param_files",
"title": "List the paths to the param files",
"topics": [
"get_param_files"
]
},
{
"page": "overwrite_csv_files",
"title": "Overwrite FACTS CSV output files",
"topics": [
"overwrite_csv_files"
]
},
{
"page": "prep_param_files",
"title": "Arrange the param files for the engines ahead of time.",
"topics": [
"prep_param_files"
]
},
{
"page": "read_facts",
"title": "Read parts of FACTS files.",
"topics": [
"read_facts"
]
},
{
"page": "reset_rfacts_paths",
"title": "Reset system dependency info",
"topics": [
"reset_rfacts_paths"
]
},
{
"page": "rfacts_paths",
"title": "Read paths to rfacts system dependencies",
"topics": [
"rfacts_paths"
]
},
{
"page": "rfacts_sitrep",
"title": "Check configuration of system dependencies",
"topics": [
"rfacts_sitrep"
]
},
{
"page": "run_engine",
"title": "Run trial simulations",
"topics": [
"run_engine"
]
},
{
"page": "run_facts",
"title": "Run FACTS",
"topics": [
"run_facts"
]
},
{
"page": "run_flfll",
"title": "Generate param files to prepare for trial simulations",
"topics": [
"run_flfll"
]
},
{
"page": "write_facts",
"title": "Write modified FACTS files.",
"topics": [
"write_facts"
]
}
],
"_readme": "https://github.com/elilillyco/rfacts/raw/HEAD/README.md",
"_rundeps": [
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"digest",
"fs",
"glue",
"lifecycle",
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"pillar",
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"rlang",
"tibble",
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],
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"filename": "generate.html",
"title": "Generating FACTS files",
"engine": "knitr::rmarkdown",
"headings": [
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"Write FACTS files",
"Check your work"
],
"created": "2020-12-02 22:22:42",
"modified": "2021-01-07 23:14:12",
"commits": 6
},
{
"source": "config.Rmd",
"filename": "config.html",
"title": "System configuration",
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"headings": [
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"Connecting rfacts to the system dependencies"
],
"created": "2020-09-17 17:51:57",
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},
{
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],
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}
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